在国内外期刊发表文章 40余篇，引用1070次，h指数14。第一或通讯作者发表SCI研究性论文 10篇；申请发明专利 3项，授权专利 3项；登记软件著作权3项。
代表性论文：
[1] Mao Zhitao#, Yuan Qianqian #, Li Haoran #, Zhang Yue, Huang Yuanyuan, Yang Chunhe, Wang Ruoyu, Yang Yongfu, Wu Yalun, Yang Shihui, Liao Xiaoping*, Ma Hongwu*. CAVE: a cloud-based platform for analysis and visualization of metabolic pathways. Nucleic Acids Research, 2023, gkad360.
[2] Yuan Qianqian#, Wei Fan #, Deng Xiaogui, Li Aonan, Shi Zhenkun, Mao Zhitao, Li Feiran*, Ma Hongwu*. Reconstruction and metabolic profiling of the genome-scale metabolic network model of Pseudomonas stutzeri A1501. Synthetic and Systems Biotechnology, 2023.
[3] Luo Jiahao; Yuan Qianqian#; Mao Yufeng; Wei fan; Zhao Juntao; Yu Wentong; Kong Shutian; Guo Yanmei; Cai Jingyi; Liao Xiaoping; Wang Zhiwen*, Hongwu Ma*. Reconstruction of a Genome-Scale Metabolic Network for Shewanella oneidensis MR-1 and Analysis of its Metabolic Potential for Bioelectrochemical Systems. Frontiers in bioengineering and biotechnology, 2022, 10: 913077-913077.
[4] Mao Yufeng#; Yuan Qianqian#; Yang Xue; Liu Pi; Cheng Ying; Luo Jiahao; Liu Huanhuan; Yao Yonghong; Sun Hongbing; Cai Tao; Ma Hongwu*; Non-natural Aldol Reactions Enable the Design and Construction of Novel One-Carbon Assimilation Pathways in vitro, Frontiers in Microbiology, 2021, 12(1360): 677596.
[5] Yuan, Xiao-Jie#; Chen, Wen-Jing#; Ma, Zeng-Xin#; Yuan, Qian-Qian#; Zhang, Min; He, Lian; Mo, Xu-Hua; Zhang, Chong; Zhang, Chang-Tai; Wang, Meng-Ying; Xing, Xin-Hui; Yang, Song*; Rewiring the native methanol assimilation metabolism by incorporating the heterologous ribulose monophosphate cycle into Methylorubrum extorquens, Metabolic Engineering, 2021, 64: 95-110.
[6] Cai, Tao; Sun, Hongbing; Qiao, Jing; Zhu, Leilei; Zhang, Fan; Zhang, Jie; Tang, Zijing; Wei, Xinlei; Yang, Jiangang; Yuan, Qianqian; Wang, Wangyin; Yang, Xue; Chu, Huanyu; Wang, Qian; You, Chun; Ma, Hongwu; Sun, Yuanxia; Li, Yin; Li, Can; Jiang, Huifeng; Wang, Qinhong; Ma, Yanhe*; Cell-free chemoenzymatic starch synthesis from carbon dioxide, Science, 2021, 373(6562): 1523.
[7] Wen, Mao#; Yuan, Qian-Qian #; Hongge, Qi; Zhiwen, Wang; Hongwu, Ma; Tao, Chen*; Recent progress in metabolic engineering of microbial formate assimilation, Applied Microbiology and Biotechnology, 2020, 104(16): 6905-6917.
[8] Yang, Xue#; Yuan, Qian-Qian #; Luo, Hao; Li, Feiran; Mao, Yufeng; Zhao, Xin; Du, Jiawei; Li,vPeishun; Ju, Xiaozhi; Zheng, Yangyang; Chen, Yang; Liu, Yuwan; Jiang, Huifeng; Yao, Yonghong; Ma, Hongwu*; Ma, Yanhe ; Systematic design and in vitro validation of novel one-carbon assimilation pathways, Metabolic Engineering, 2019, 56: 142-153.
[9] Yuan, Qian-Qian; Huang, Teng; Li, Peishun; Hao, Tong; Li, Feiran; Ma, Hongwu*; Wang, Zhiwen*; Zhao, Xueming; Chen, Tao*; Goryanin, Igor; Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models. PLos One, 2017, 12(1): e0169437.
