在Nature Communications、Metabolic Engineering、Carbohydrate Polymers、Microbial Cell Factories等期刊发表论文43篇，申请专利23项，授权12项，成果转化2项, 参编教材两本，专著一部。

1. Jiaqi Gao, Zijun Hao, Jie Zhen, Wenqin Bai*. Transcriptomics and Experimental Analysis Reveal the Molecular Basis of pH-Dependent Pullulan Biosynthesis in Aureobasidium pullulans BL06ΔPMAs. In preparation.

2. Zhaoxuan Feng, Shuyu Chen, Jie Zhen, Wenqin Bai*. Shrinkable elastic hydrogel for solvent-induced resolution enhancement in 3D printing. In preparation.

3. Zheng Hu, Marwa Abou-Taleb, Jianyong Xu, Hui Song, Salwa Mowafi, Hongchen Zheng, Wenqin Bai*, Hosam El-Sayed*. A New Hydrogen Peroxide-Tolerant Alkaline Protease as a Benign Element for Simultaneous Bleaching and Felt-Proofing of Wool. Sustainable Chemistry and Pharmacy. major revision.

4. Qingfang Meng, Dexin Wang, Xiaoping Fu, Weitao Geng*, Hongchen Zheng*, Wenqin Bai*. Converting Bacillus subtilis 168 to a synthetic methylotroph by combinatorial metabolic regulation strategies. J. Agric. Food Chem. 2025, 73(8):4755-4763.

5. Jiaqi Gao, Xiaoping Liao, Hongwu Ma, Wenqin Bai*. Transcriptome analysis of Aureobasidium pullulans BL06 and identification of key factors affecting pullulan production. Carbohydrate Polymers. 2025, 349(Pt A):122984.

6. Senqin Hou, Shibin Yang, Wenqin Bai*. Multi-gene precision editing tool using CRISPR-Cas12a/Cpf1 system in Ogataea polymorpha. Microbial Cell Factories. 2025, 24(1):28.

7. Huizhi Liang, Wenkang Dong, Xiaoping Fu, Hongchen Zheng, Ming Li, Wenqin Bai*. High-efficiency secretory expression of polyethylene terephthalate hydrolases in Bacillus amyloliquefaciens 205 and complete degradation of PET by its crude enzyme. Int J Biol Macromol. 2025, 330(Pt 2):148111.

8. Yi Hu, Yu Duan, Yuan Zhang, Longxue Ma, Yida Zhai, Wuxi Chen, Liucheng Long, Wenqin Bai, Yanbing Shen, Limei Chen*, Xiaoqing Ren*, Demao Li*. Reprogramming Schizochytrium cell factory for High-Yield production of astaxanthin via mutagenesis and metabolic engineering. Chemical Engineering Journal. 2025, 515:163556.

9. Aijia Shi, Menghan Chi, Zhen Zhu, Wenqin Bai, Jinling Cai, Limei Chen* & Demao Li*. Screening and fermentation optimization of Methylophilus sp. HN238 for efficient microbial protein production using methanol. Systems Microbiology and Biomanufacturing. 2025, 5:1050–1066.

10. Meijuan Zhang, Jie Zhen, Jia Teng, Xingya Zhao, Xiaoping Fu, Hui Song, Yeni Zhang, Hongchen Zheng*, Wenqin Bai*. N-Terminal Sequences of Signal Peptides Assuming Critical Roles in Expression of Heterologous Proteins in Bacillus subtilis. Microorganisms.2024, 2(7):1275.

11. Dexin Wang, Xiaoping Fu, Jiaqi Gao, Xingya Zhao, Wenqin Bai*. Enhancing Poly-γ-glutamic Acid Production in Bacillus tequilensis BL01 through a Multi enzyme Assembly Strategy and Expression Features of Glutamate Synthesis from Corynebacterium glutamicum. J Agric Food Chem. 2024, 72(15):8674-8683.

12. Wenxin Huang, Sijia Wang, Zhaoxuan Feng, Dasen Zhou, Wenqin Bai*. Tyrosinase-Modified UHMW SELP Polymers as Wet and Underwater Adhesives to Achieve Multi-interface Adhesion. ACS Synth. Biol. 2024, 13, 4, 1191-1204.

13. Zhaoxuan Feng, Sijia Wang, Wenxin Huang, Wenqin Bai*. A potential bilayer skin substitute based on electrospun silk-elastin-like protein nanofiber membrane covered with bacterial cellulose. Colloids and Surfaces B: Biointerfaces. 2024, 234:113677.

14. Xingya Zhao, Xiaoping Fu, Jie Zhen, Jun Yang, Hui Song*, Hongchen Zheng*, Wenqin Bai*. BsuMI regulates DNA transformation in Bacillus subtilis besides the defense system and the constructed strain with BsuMI-absence is applicable as a universal transformation platform for wild-type Bacillus. Microbial Cell Factories. 2024, 23(1):225.

15. Meijuan Zhang, Xiaoping Fu, Rongrong Gu, Bohua Zhao, Xingya Zhao, Hui Song, Hongchen Zheng*, Jianyong Xu*, Wenqin Bai*. A novel starch-active lytic polysaccharide monooxygenase discovered with bioinformatics screening and its application in textile desizing. BMC Biotechnology 2024, 24(1):2.

16. Sijia Wang†, Wenxin Huang†, Zhaoxuan Feng, Xiaoli Tian, Dexin Wang, Lang Rao, Ming Tan, Niran Roongsawang, Hui Song*, Wenxia Jiang*, Wenqin Bai*. Laccase-mediated formation of hydrogels based on silk-elastin-like protein polymers with ultra-high molecular weight. International Journal of Biological Macromolecules. 2023, 231:123239.

17. Shuyu Chen†, Hongchen Zheng†, Jiaqi Gao, Hui Song, Wenqin Bai*. High-level production of pullulan and its biosynthesis regulation in Aureobasidium pullulans BL06. Frontiers in Bioengineering and Biotechnology. 2023, 11:1131875.

18. Xi Sun, Jun Yang, Xiaoping Fu, Xingya Zhao, Jie Zhen, Hui Song, Jianyong Xu, Hongchen Zheng*, Wenqin Bai*. Trehalose Production Using Three Extracellular Enzymes Produced via One-Step Fermentation of an Engineered Bacillus subtilis Strain. Bioengineering-Basel. 2023, 10(8):977.

19. Yifan Yang, Xiaoping Fu, Xingya Zhao, Jianyong Xu, Yihan Liu*, Hongchen Zheng*, Wenqin Bai*, Hui Song. Overexpression of a thermostable α-amylase through genome integration in Bacillus subtilis. Fermentation-Basel. 2023, 9(2):139.

20. Dexin Wang, Xiaoping Fu, Dasen Zhou, Jiaqi Gao, Wenqin Bai*. Engineering of a newly isolated Bacillus tequilensis BL01 for poly-γ- glutamic acid production from citric acid. Microbial Cell Factories. 2022, 21(1):276.

21. Zhaoxuan Feng, Jinsong Li, Dasen Zhou, Hui Song, Jiaqi Lv*, Wenqin Bai*. A novel photocurable pullulan-based bioink for digital light processing 3D printing. International Journal of Bioprinting. 2023, 9(2): 657.

22. Zhaoxuan Feng†, Shuyu Chen†, Abdullah Ahmad, Longjiao Chen, Wenqin Bai*. Ultra-high molecular weight pullulan-based material with high deformability and shape-memory properties. Carbohydrate Polymers. 2022, 295:119836.

23. Wenqin Bai†, Winston E. Anthony†, Christopher Hartline, Shaojie Wang, Bin Wang, Jie Ning, Fong-Fu Hsu, Gautam Dantas*, Fuzhong Zhang*. Engineering Diverse Fatty Acid Compositions of Phospholipids in Escherichia coli. Metabolic Engineering. 2022, 74:11-23.

24. Wenqin Bai, Cameron J. Sargent, Jeong-Mo Choi, Rohit V. Pappu, Fuzhong Zhang*. Covalently-assembled single-chain protein nanostructures with ultra-high stability. Nature Communications. 2019, 10, 3317.

25. Wenqin Bai, Weitao Geng, Shaojie Wang and Fuzhong Zhang*. Biosynthesis, regulation, and engineering of microbially produced branched biofuels. Biotechnology for Biofuels. 2019, 12:84.

26. Christopher H. Bowen, Bin Dai, Cameron J. Sargent, Wenqin Bai, Pranay Ladiwala, Huibao Feng, Wenwen Huang, David L. Kaplan, Jonathan M. Galazka, Fuzhong Zhang*. Recombinant spidroins fully replicate primary mechanical properties of natural spider silk. Biomacromolecules, 2018, 19, 3853-3860.

27. Wenqin Bai, Yi-Shu Tai, Jingyu Wang, Jilong Wang, Pooja Jambunathan, Kevin J. Fox, Kechun Zhang*. Engineering Nonphosphorylative Metabolism to Synthesize Mesaconate from D-Xylose and L-Arabinose in Escherichia coli. Metabolic Engineering, 2016 (38): 285–292.

28. Wenqin Bai*, Yufan Cao, Jun Liu, Qinhong Wang, Zhenhu Jia. Improvement of alkalophilicity of an alkaline xylanase Xyn11A-LC from Bacillus sp. SN5 by random mutation and Glu135 saturation mutagenesis. BMC Biotechnology, 2016(16):77

29. Wenqin Bai, Yanfen Xue, Yueju Zhao, Qinhong Wang, Yanhe Ma*. Structural insight into and mutational analysis of family 11 xylanases: implications for mechanisms of higher pH catalytic adaptation. PLoS One. 2015, Jul 10, 10(7):e0132834.

30. Wenqin Bai, Yanfen Xue, Cheng Zhou, Yanhe Ma*. Cloning, expression and characterization of an alkali-tolerant xylanase from alkalophilic Bacillus sp. SN5. Biotechnol Appl Biochem. 2015, 62(2):208-17.

31. Wenqin Bai, Cheng Zhou, Yanfen Xue, Chunhsiang Huang, Ruiting Guo, Yanhe Ma*. Three-dimensional structure of an alkaline xylanase Xyn11A-LC from alkalophilic Bacillus sp. SN5 and improvement of its thermal performance by introducing arginines substitutions. Biotechnol Lett. 2014, 36(7):1495-501.

32. Wenqin Bai, Yanfen Xue, Cheng Zhou, Yanhe Ma*. Cloning, expression and characterization of a novel salt-tolerant xylanase from Bacillus sp. SN5. Biotechnol Lett. 2012, 34(11):2093-9.